This really isn't an easy issue to deal with. It seems that if the engine is running one would only need to know the fuel consumption during that time-frame. However some energy may be going straight to the motor driving the wheels while some power may, or may not, be going to the battery. Later that battery stored power can be used to drive the wheels. Even when the clutch is engaged and the engine is directly connected to the wheels it may also be sending power to the battery.
When using the manual method at the pump again it seems straight forward to just take the gallons used and the miles driven. But not all of that can always be attributed to the gas engine because the battery may have been externally charged, or regen could add power to the car.
As always the car toggles between gas engine running and battery power only, or a combination of the two.
So the car isn't running independent of external power (where I also include regen). It isn't like an ICE car where all power can be traced back to the gas.
I really don't know how to compute MPG, so I gave up trying to do it. I'm quite happy to know, with a solar roof on our house, we drive for free most of the time and I don't care if I get 42 mpg or 50 mpg on occasional long trips. The car is great either way.